Dr David Welch

Senior Lecturer

In: School of Computer Science » Faculty of Science

Biography

For complete information, see my homepage.

Selected publications and creative works (Research Outputs)

Vaughan, T. G., Leventhal, G. E., Rasmussen, D. A., Drummond, A. J., Welch, D., & Stadler, T. (2019). Estimating Epidemic Incidence and Prevalence from Genomic Data. Molecular biology and evolution, 36 (8), 1804-1816. 10.1093/molbev/msz106
Other University of Auckland co-authors: Alexei Drummond
Groendyke, C., & Welch, D. (2018). epinet : An R Package to Analyze Epidemics Spread across Contact Networks. Journal of Statistical Software, 83 (11).10.18637/jss.v083.i11
Vaughan, T. G., Welch, D., Drummond, A. J., Biggs, P. J., George, T., & French, N. P. (2017). Inferring Ancestral Recombination Graphs from Bacterial Genomic Data. Genetics, 205 (2), 857-870. 10.1534/genetics.116.193425
URL: http://hdl.handle.net/2292/32525
Other University of Auckland co-authors: Alexei Drummond
Gavryushkina, A., Heath, T. A., Ksepka, D. T., Stadler, T., Welch, D., & Drummond, A. J. (2017). Bayesian Total-Evidence Dating Reveals the Recent Crown Radiation of Penguins. Systematic Biology, 66 (1), 57-73. 10.1093/sysbio/syw060
URL: http://hdl.handle.net/2292/32528
Other University of Auckland co-authors: Alexei Drummond
Sainudiin, R., & Welch, D. (2016). The transmission process: A combinatorial stochastic process for the evolution of transmission trees over networks. Journal of Theoretical Biology, 410, 137-170. 10.1016/j.jtbi.2016.07.038
URL: http://hdl.handle.net/2292/32524
Guindon, S., Guo, H., & Welch, D. (2016). Demographic inference under the coalescent in a spatial continuum. Theoretical Population Biology, 111, 43-50. 10.1016/j.tpb.2016.05.002
URL: http://hdl.handle.net/2292/32526
Welch, D., vaughan, T. G., stadler, T., drummond, A. J., leventhal, G., & rasmussen, D. (12/9/2016). Combined inference of epidemic trajectories, parameters and phylogenetic trees from viral genomes. Poster presented at Probabilistic Modeling in Genomics 2016, Oxford University, UK.
URL: http://hdl.handle.net/2292/38014
Other University of Auckland co-authors: Alexei Drummond
Gavryushkina, A., Welch, D., Stadler, T., & Drummond, A. J. (2014). Bayesian inference of sampled ancestor trees for epidemiology and fossil calibration. PLoS Computational Biology, 10 (12)10.1371/journal.pcbi.1003919
Other University of Auckland co-authors: Alexei Drummond