Dr David Welch

Senior Lecturer

In: School of Computer Science » Faculty of Science

Biography

For complete information, see my homepage.

Selected publications and creative works (Research Outputs)

Liu, Y.-Y., Welch, D., England, R., Stacey, J., & Harbison, S. (2020). Forensic STR allele extraction using a machine learning paradigm. Forensic science international. Genetics, 4410.1016/j.fsigen.2019.102194
URL: http://hdl.handle.net/2292/50073
Vaughan, T. G., Leventhal, G. E., Rasmussen, D. A., Drummond, A. J., Welch, D., & Stadler, T. (2019). Estimating Epidemic Incidence and Prevalence from Genomic Data. Molecular biology and evolution, 36 (8), 1804-1816. 10.1093/molbev/msz106
Other University of Auckland co-authors: Alexei Drummond
Groendyke, C., & Welch, D. (2018). epinet : An R Package to Analyze Epidemics Spread across Contact Networks. Journal of Statistical Software, 83 (11).10.18637/jss.v083.i11
Vaughan, T. G., Welch, D., Drummond, A. J., Biggs, P. J., George, T., & French, N. P. (2017). Inferring Ancestral Recombination Graphs from Bacterial Genomic Data. Genetics, 205 (2), 857-870. 10.1534/genetics.116.193425
URL: http://hdl.handle.net/2292/32525
Other University of Auckland co-authors: Alexei Drummond
Gavryushkina, A., Heath, T. A., Ksepka, D. T., Stadler, T., Welch, D., & Drummond, A. J. (2017). Bayesian Total-Evidence Dating Reveals the Recent Crown Radiation of Penguins. Systematic Biology, 66 (1), 57-73. 10.1093/sysbio/syw060
URL: http://hdl.handle.net/2292/32528
Other University of Auckland co-authors: Alexei Drummond
Sainudiin, R., & Welch, D. (2016). The transmission process: A combinatorial stochastic process for the evolution of transmission trees over networks. Journal of Theoretical Biology, 410, 137-170. 10.1016/j.jtbi.2016.07.038
URL: http://hdl.handle.net/2292/32524
Guindon, S., Guo, H., & Welch, D. (2016). Demographic inference under the coalescent in a spatial continuum. Theoretical Population Biology, 111, 43-50. 10.1016/j.tpb.2016.05.002
URL: http://hdl.handle.net/2292/32526
Welch, D., vaughan, T. G., stadler, T., drummond, A. J., leventhal, G., & rasmussen, D. (12/9/2016). Combined inference of epidemic trajectories, parameters and phylogenetic trees from viral genomes. Poster presented at Probabilistic Modeling in Genomics 2016, Oxford University, UK.
URL: http://hdl.handle.net/2292/38014
Other University of Auckland co-authors: Alexei Drummond