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Dr David Welch


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Selected publications and creative works (Research Outputs)

As of 29 October 2020 there will be no automatic updating of 'selected publications and creative works' from Research Outputs. Please continue to keep your Research Outputs profile up to date.
  • Liu, Y.-Y., Welch, D., England, R., Stacey, J., & Harbison, S. (2020). Forensic STR allele extraction using a machine learning paradigm. Forensic science international. Genetics, 4410.1016/j.fsigen.2019.102194
  • Vaughan, T. G., Leventhal, G. E., Rasmussen, D. A., Drummond, A. J., Welch, D., & Stadler, T. (2019). Estimating Epidemic Incidence and Prevalence from Genomic Data. Molecular biology and evolution, 36 (8), 1804-1816. 10.1093/molbev/msz106
    Other University of Auckland co-authors: Alexei Drummond
  • Groendyke, C., & Welch, D. (2018). epinet : An R Package to Analyze Epidemics Spread across Contact Networks. Journal of Statistical Software, 83 (11).10.18637/jss.v083.i11
  • Vaughan, T. G., Welch, D., Drummond, A. J., Biggs, P. J., George, T., & French, N. P. (2017). Inferring Ancestral Recombination Graphs from Bacterial Genomic Data. Genetics, 205 (2), 857-870. 10.1534/genetics.116.193425
    Other University of Auckland co-authors: Alexei Drummond
  • Gavryushkina, A., Heath, T. A., Ksepka, D. T., Stadler, T., Welch, D., & Drummond, A. J. (2017). Bayesian Total-Evidence Dating Reveals the Recent Crown Radiation of Penguins. Systematic Biology, 66 (1), 57-73. 10.1093/sysbio/syw060
    Other University of Auckland co-authors: Alexei Drummond
  • Sainudiin, R., & Welch, D. (2016). The transmission process: A combinatorial stochastic process for the evolution of transmission trees over networks. Journal of Theoretical Biology, 410, 137-170. 10.1016/j.jtbi.2016.07.038
  • Guindon, S., Guo, H., & Welch, D. (2016). Demographic inference under the coalescent in a spatial continuum. Theoretical Population Biology, 111, 43-50. 10.1016/j.tpb.2016.05.002
  • Welch, D., vaughan, T. G., stadler, T., drummond, A. J., leventhal, G., & rasmussen, D. (12/9/2016). Combined inference of epidemic trajectories, parameters and phylogenetic trees from viral genomes. Poster presented at Probabilistic Modeling in Genomics 2016, Oxford University, UK.
    Other University of Auckland co-authors: Alexei Drummond

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